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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8806635_8806993_F

Intron Information:

Intron Rank:
146441
Intron Class:
major
Intron Phase:
Intron Coordinates:
8806635 - 8806993
Intron Length:
359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
CTTACACTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.1
1.09
0.7
87
30
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
83.3
0.75
0.9
80.8
36.2
Minor 5ss
35.9
-1.6
3
49.5
46.7
Minor BPS
47.7
-0.3
2
58.15
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028907
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035935
8801287 - 8817296
16010