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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8808313_8808658_F

Intron Information:

Intron Rank:
146437
Intron Class:
major
Intron Phase:
Intron Coordinates:
8808313 - 8808658
Intron Length:
346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATAAC
5'SS Class:
major
3'SS Sequence:
GTCTTTTTAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TGTTTATTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
74.7
35.6
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
68.7
0.42
1.1
71.3
37.6
Minor 5ss
34
-1.8
3.1
44.4
43.7
Minor BPS
65.7
0.57
1.7
83.28
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028907
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035935
8801287 - 8817296
16010
ENSAPLT00000022091
8807386 - 8808762
1377