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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_882368_883739_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
882368 - 883739
Intron Length:
1372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
GTTTCCTCACCA
Flanking Amino Acid:
KFILRAECVQFERDITIWNN
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
80.7
0.69
0.7
73
31.8
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
63.3
0.41
1.9
76.68
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012596
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030411
858981 - 885138
26158
ENSAPLT00000018801
858981 - 885138
26158
ENSAPLT00000013108
858981 - 885138
26158
ENSAPLT00000040674
858981 - 885138
26158