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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8843319_8846572_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8843319 - 8846572
Intron Length:
3254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTCTGCTGAAAA
Flanking Amino Acid:
TWRALAGDVKDWESAIRIGV
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
63.9
42.4
Major BPS
79
0.72
1
69
38.9
Major PPT
92.1
0.95
0.7
85.1
34.9
Minor 5ss
25.7
-2.8
3.1
32.8
42.2
Minor BPS
53.5
0.11
2
69.51
42.5

Associated Gene:

Gene:
QSOX2
Ensembl Gene ID:
ENSAPLG00000008146
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031933
8843075 - 8864019
20945
ENSAPLT00000008467
8842792 - 8864019
21228
ENSAPLT00000037319
8843075 - 8868554
25480