Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8856797_8860743_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8856797 - 8860743

Intron Length:

3947

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCAGT

5'SS Class:

strong_major

3'SS Sequence:

TCTGTCTTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTCAT

U12 Branch Point Sequence:

TGGTGCTAAATG

Flanking Amino Acid:

ALRPKALINTGLEDNPQIVL

Intron Amino Acid Position:

467

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.95

0.9

81.8

38.5

Major BPS

0.65

1.1

77.4

37.3

Major PPT

80.9

0.69

0.8

73.3

37.2

Minor 5ss

41.1

-1

2.9

57.9

46.4

Minor BPS

-0.2

2.1

55.43

46.3

Associated Gene:

Gene:

QSOX2

Ensembl Gene ID:

ENSAPLG00000008146

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031933

8843075 - 8864019

20945

ENSAPLT00000008467

8842792 - 8864019

21228