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Intron Name: Anas_platyrhynchos_platyrhynchos_18_8872774_8873315_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8872774 - 8873315

Intron Length:

542

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGCGTGGG

5'SS Class:

major

3'SS Sequence:

CCCCCCCGCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAG

U12 Branch Point Sequence:

CCGCTCTCAGCG

Flanking Amino Acid:

DGVYCKEDFFKRFGTKCAAC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.1

0.45

1.1

57.1

42.4

Major BPS

58.6

0.22

1.5

38.9

Major PPT

61.8

0.27

0.9

52.7

31.1

Minor 5ss

27.3

-2.6

3.2

30.6

37.1

Minor BPS

42.7

-0.6

1.8

40.18

43.9

Associated Gene:

Gene:

LHX3

Ensembl Gene ID:

ENSAPLG00000011072

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011519

8869812 - 8876472

6661