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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8873519_8873694_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8873519 - 8873694
Intron Length:
176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCCCCC
5'SS Class:
major
3'SS Sequence:
CCCTCACCGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
AGCTGCTGATTT
Flanking Amino Acid:
KADYETAKQREAESTAKRPR
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.8
0.33
1.3
51.8
45.5
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
63.1
0.3
1
58
32
Minor 5ss
43.6
-0.7
3.1
60.9
43.6
Minor BPS
44.5
-0.3
2
59.73
43.9

Associated Gene:

Gene:
LHX3
Ensembl Gene ID:
ENSAPLG00000011072
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011519
8869812 - 8876472
6661