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Intron Name: Anas_platyrhynchos_platyrhynchos_18_8874120_8875660_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8874120 - 8875660

Intron Length:

1541

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCGGTCCC

5'SS Class:

major

3'SS Sequence:

GCTTCCCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGTACAA

U12 Branch Point Sequence:

TCTCCCAGTACA

Flanking Amino Acid:

PDSDAEVSFTDEPSMSEMSH

Intron Amino Acid Position:

257

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.45

1.4

63.7

38.9

Major BPS

49.8

-0

1.1

58.8

38.1

Major PPT

81.1

0.7

0.8

77.3

31.5

Minor 5ss

29.5

-2.3

2.9

36.8

40.3

Minor BPS

46.7

-0.2

2.1

63.12

42.3

Associated Gene:

Gene:

LHX3

Ensembl Gene ID:

ENSAPLG00000011072

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011519

8869812 - 8876472

6661