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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_90684_91684_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
90684 - 91684
Intron Length:
1001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
TGTACCCCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTGTAC
U12 Branch Point Sequence:
TCTTCCTGTACC
Flanking Amino Acid:
MFPYPCYTRDDFLFVIEHMM
Intron Amino Acid Position:
610

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
71.2
34.5
Major BPS
44.7
-0.3
1.3
40.7
39.7
Major PPT
65.4
0.35
1
56.5
39.8
Minor 5ss
31.9
-2.1
2.7
33.2
35.4
Minor BPS
64.1
0.43
1.8
75.69
40.7

Associated Gene:

Gene:
ABCA2
Ensembl Gene ID:
ENSAPLG00000002548
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036122
70053 - 112105
42053
ENSAPLT00000025674
72667 - 112105
39439
ENSAPLT00000017929
72667 - 112105
39439
ENSAPLT00000002789
72667 - 112105
39439