Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9071874_9072061_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9071874 - 9072061

Intron Length:

188

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTTAGCTTA

5'SS Class:

major

3'SS Sequence:

ATTCTTCTTCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

CATTTTTCAACG

Flanking Amino Acid:

SDLGCAPIKMSSHMAMIDAL

Intron Amino Acid Position:

100

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.3

0.5

1.2

68.9

38.4

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

81.8

0.71

0.8

74.3

35.9

Minor 5ss

43.9

-0.7

2.8

54.3

44.1

Minor BPS

56.5

0.07

1.6

42.2

Associated Gene:

Gene:

CAMSAP1

Ensembl Gene ID:

ENSAPLG00000009966

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010392

9071577 - 9086791

15215

ENSAPLT00000033717

9051995 - 9086791

34797