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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9072549_9076964_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9072549 - 9076964
Intron Length:
4416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCACAT
U12 Branch Point Sequence:
ATCACATGAACA
Flanking Amino Acid:
QLMESPGHQKVRYRRDHLSS
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
68.9
0.47
1
75
30
Major PPT
92.6
0.96
0.5
92.8
16.9
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
52.2
0.07
1.8
65.17
40.5

Associated Gene:

Gene:
CAMSAP1
Ensembl Gene ID:
ENSAPLG00000009966
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010392
9071577 - 9086791
15215