Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9084541_9084626_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9084541 - 9084626

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCC|GTAAGAATT

5'SS Class:

major

3'SS Sequence:

TCTTGTTTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTTAT

U12 Branch Point Sequence:

TGTTTCACATTT

Flanking Amino Acid:

SDSGTKCSSTPDNLSSAQSG

Intron Amino Acid Position:

1354

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.45

1.3

75.8

Major BPS

87.7

0.94

0.8

77.7

36.7

Major PPT

88.8

0.87

0.7

83.9

Minor 5ss

41.3

-1

3.2

63.2

41.1

Minor BPS

46.5

-0.1

69.65

41.4

Associated Gene:

Gene:

CAMSAP1

Ensembl Gene ID:

ENSAPLG00000009966

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033717

9051995 - 9086791

34797

ENSAPLT00000010392

9071577 - 9086791

15215