Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9084730_9085093_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9084730 - 9085093

Intron Length:

364

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAGATA

5'SS Class:

strong_major

3'SS Sequence:

TACTCCCCAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATTAT

U12 Branch Point Sequence:

CGTATCATAATT

Flanking Amino Acid:

SVHSGGTPSQRVESMESLPI

Intron Amino Acid Position:

1388

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.3

0.78

0.9

81.1

32.6

Major BPS

76.9

0.67

66.3

40.4

Major PPT

68.7

0.42

0.9

62.9

32.8

Minor 5ss

35.2

-1.7

3.3

48.1

47.6

Minor BPS

53.8

0.2

1.7

69.97

41.1

Associated Gene:

Gene:

CAMSAP1

Ensembl Gene ID:

ENSAPLG00000009966

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010392

9071577 - 9086791

15215

ENSAPLT00000033717

9051995 - 9086791

34797