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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9099694_9100500_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9099694 - 9100500
Intron Length:
807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
GCCGGGCTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCGTCAC
U12 Branch Point Sequence:
CCCCCGTCACCT
Flanking Amino Acid:
TSEPHDIRAQSQISINVEDC
Intron Amino Acid Position:
1033

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
84
26.7
Major BPS
50
0
1.2
54.6
40.8
Major PPT
61.9
0.27
1
49.5
43.9
Minor 5ss
31.6
-2.1
2.6
37.4
40
Minor BPS
39.6
-0.7
2.3
52.75
48.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009409
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032480
9095213 - 9125274
30062
ENSAPLT00000018402
9097680 - 9111458
13779
ENSAPLT00000038375
9094213 - 9114518
20306
ENSAPLT00000009855
9095213 - 9125274
30062
ENSAPLT00000037949
9094213 - 9114518
20306
ENSAPLT00000035258
9095213 - 9114518
19306