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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9100522_9100795_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9100522 - 9100795
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TCCCCAATTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TTTTCCCCAATT
Flanking Amino Acid:
TESHMFATSEPHDIRAQSQI
Intron Amino Acid Position:
1026

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.7
1.06
0.8
83
28.9
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
68.9
0.43
0.8
62.6
31.9
Minor 5ss
19.2
-3.5
4
32
42.8
Minor BPS
66.8
0.61
1.9
89.35
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009409
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035258
9095213 - 9114518
19306
ENSAPLT00000032480
9095213 - 9125274
30062
ENSAPLT00000018402
9097680 - 9111458
13779
ENSAPLT00000038375
9094213 - 9114518
20306
ENSAPLT00000009855
9095213 - 9125274
30062
ENSAPLT00000037949
9094213 - 9114518
20306