Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9102057_9102257_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9102057 - 9102257

Intron Length:

201

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGGGA

5'SS Class:

strong_major

3'SS Sequence:

CTTCCCATCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCCAT

U12 Branch Point Sequence:

GGCTGCTGGACC

Flanking Amino Acid:

KTIVNVQTMFRLFPSLSIIT

Intron Amino Acid Position:

883

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

69.2

37.4

Major BPS

72.3

0.55

1.2

80.7

33.2

Major PPT

75.6

0.58

0.8

69.6

29.4

Minor 5ss

23.1

-3.1

3.2

43.5

Minor BPS

47.2

-0.2

56.08

42.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009409

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009855

9095213 - 9125274

30062

ENSAPLT00000037949

9094213 - 9114518

20306

ENSAPLT00000035258

9095213 - 9114518

19306

ENSAPLT00000032480

9095213 - 9125274

30062

ENSAPLT00000018402

9097680 - 9111458

13779

ENSAPLT00000038375

9094213 - 9114518

20306