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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9102393_9102688_R

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
9102393 - 9102688
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAGGTGTT
5'SS Class:
major
3'SS Sequence:
GGGGACTGCCCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
TCTTTGGGGACT
Flanking Amino Acid:
MVYYMEGTIDNLDSLLQCGI
Intron Amino Acid Position:
838

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
79
35.3
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
50.1
0
1.1
38.8
44.3
Minor 5ss
38.9
-1.2
3.7
57.4
41.7
Minor BPS
41.5
-0.5
2.6
66.67
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009409
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009855
9095213 - 9125274
30062
ENSAPLT00000037949
9094213 - 9114518
20306
ENSAPLT00000035258
9095213 - 9114518
19306
ENSAPLT00000032480
9095213 - 9125274
30062
ENSAPLT00000018402
9097680 - 9111458
13779
ENSAPLT00000038375
9094213 - 9114518
20306