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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9103323_9103825_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9103323 - 9103825
Intron Length:
503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTTGC
5'SS Class:
major
3'SS Sequence:
ATTTCTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
AGTTCTGCAATT
Flanking Amino Acid:
QSDEEGSAVVEYVKGYPPNS
Intron Amino Acid Position:
721

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1
63
38.7
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
79.9
0.67
0.9
74
36.1
Minor 5ss
36.4
-1.5
2.8
40.1
40
Minor BPS
48.7
-0
2.1
71.14
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009409
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035258
9095213 - 9114518
19306
ENSAPLT00000032480
9095213 - 9125274
30062
ENSAPLT00000018402
9097680 - 9111458
13779
ENSAPLT00000038375
9094213 - 9114518
20306
ENSAPLT00000009855
9095213 - 9125274
30062
ENSAPLT00000037949
9094213 - 9114518
20306