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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9105191_9105339_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9105191 - 9105339
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGGACT
5'SS Class:
major
3'SS Sequence:
GCTCCCCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TGGCTTTGAACG
Flanking Amino Acid:
FTYAAFHAHKKYGVCLIGIR
Intron Amino Acid Position:
569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
75
34.6
Major BPS
74.8
0.62
1
67
39.8
Major PPT
72.1
0.5
0.8
65.1
30.5
Minor 5ss
31.2
-2.2
3.2
41.3
39
Minor BPS
50
-0.1
1.5
53.99
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009409
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032480
9095213 - 9125274
30062
ENSAPLT00000018402
9097680 - 9111458
13779
ENSAPLT00000009855
9095213 - 9125274
30062
ENSAPLT00000037949
9094213 - 9114518
20306
ENSAPLT00000035258
9095213 - 9114518
19306