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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9105191_9106194_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9105191 - 9106194
Intron Length:
1004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
GCTCCCCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TGGCTTTGAACG
Flanking Amino Acid:
ITLLVHTSRGQYGVCLIGIR
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
69
35.8
Major BPS
74.8
0.62
1
67
39.8
Major PPT
72.1
0.5
0.8
65.1
30.5
Minor 5ss
32.1
-2
3.3
47.2
42.3
Minor BPS
50
-0.1
1.5
53.99
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009409
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038375
9094213 - 9114518
20306