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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9107458_9107575_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9107458 - 9107575
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGGGCC
5'SS Class:
major
3'SS Sequence:
CTCTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAG
U12 Branch Point Sequence:
GCCGCACCAACT
Flanking Amino Acid:
NEFYAHPRLQDYYVVILCPT
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.3
71
34.6
Major BPS
50.8
0.02
1.4
49.1
38
Major PPT
86.3
0.82
0.7
84.1
23.9
Minor 5ss
25.9
-2.8
3.3
33.7
41.8
Minor BPS
40.9
-0.6
2.1
54.83
46.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009409
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035258
9095213 - 9114518
19306
ENSAPLT00000032480
9095213 - 9125274
30062
ENSAPLT00000018402
9097680 - 9111458
13779
ENSAPLT00000038375
9094213 - 9114518
20306
ENSAPLT00000009855
9095213 - 9125274
30062
ENSAPLT00000037949
9094213 - 9114518
20306