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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9108999_9109184_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9108999 - 9109184
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGTGTATT
5'SS Class:
major
3'SS Sequence:
CTTGCTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
CTGTGAGAAACT
Flanking Amino Acid:
MINTVPFIITIFWPPLRNLF
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
80
34.6
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
80.6
0.69
0.8
73.1
37.3
Minor 5ss
42.8
-0.8
2.8
60.3
44.3
Minor BPS
38.4
-0.8
2.6
60.11
49.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009409
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032480
9095213 - 9125274
30062
ENSAPLT00000018402
9097680 - 9111458
13779
ENSAPLT00000038375
9094213 - 9114518
20306
ENSAPLT00000009855
9095213 - 9125274
30062
ENSAPLT00000037949
9094213 - 9114518
20306
ENSAPLT00000035258
9095213 - 9114518
19306