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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9110088_9110399_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9110088 - 9110399
Intron Length:
312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCTGT
5'SS Class:
major
3'SS Sequence:
GTGTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCGGAT
U12 Branch Point Sequence:
CGGTTCGGATCC
Flanking Amino Acid:
TVFNQSTKINWSHIFWVDRK
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
67.5
40.3
Major BPS
66.4
0.41
1.4
65.3
43.7
Major PPT
82.8
0.74
0.9
77.1
37.1
Minor 5ss
40.3
-1.1
3.1
52.7
46.4
Minor BPS
39.8
-0.7
2.2
46.94
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009409
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035258
9095213 - 9114518
19306
ENSAPLT00000032480
9095213 - 9125274
30062
ENSAPLT00000018402
9097680 - 9111458
13779
ENSAPLT00000038375
9094213 - 9114518
20306
ENSAPLT00000009855
9095213 - 9125274
30062
ENSAPLT00000037949
9094213 - 9114518
20306