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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9110457_9111249_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9110457 - 9111249
Intron Length:
793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GTTTCTTTTTCT
Flanking Amino Acid:
LLDNPEEGIGCWECEKQNYT
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
88.1
0.86
0.8
80.8
36.8
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
45.7
-0.2
3.6
80.6
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009409
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032480
9095213 - 9125274
30062
ENSAPLT00000018402
9097680 - 9111458
13779
ENSAPLT00000038375
9094213 - 9114518
20306
ENSAPLT00000009855
9095213 - 9125274
30062
ENSAPLT00000037949
9094213 - 9114518
20306
ENSAPLT00000035258
9095213 - 9114518
19306