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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9112047_9125125_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9112047 - 9125125
Intron Length:
13079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGCAG
5'SS Class:
major
3'SS Sequence:
GCTGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
CCCGCACTGACC
Flanking Amino Acid:
MGSLGSDVGQRVQVEFYVNE
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
55
43.5
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
69.3
0.43
0.9
62
34.8
Minor 5ss
36.3
-1.6
3.2
46.8
48.6
Minor BPS
42.2
-0.6
2
47.1
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009409
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032480
9095213 - 9125274
30062