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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9192831_9192942_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9192831 - 9192942
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
CGGTCCCCACCC
Flanking Amino Acid:
LLNALNSYKSRFLCGKEIKK
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
71.4
40.3
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
81.5
0.71
0.8
73.7
36.9
Minor 5ss
35.1
-1.7
3.1
48.4
47.3
Minor BPS
43.1
-0.5
2.1
51.98
44.9

Associated Gene:

Gene:
PHF19
Ensembl Gene ID:
ENSAPLG00000008706
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009074
9191542 - 9196933
5392