Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_92043_92477_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

92043 - 92477

Intron Length:

435

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTACGTCCC

5'SS Class:

major

3'SS Sequence:

CCACTGCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTCCAC

U12 Branch Point Sequence:

CGCCTCTCCACT

Flanking Amino Acid:

AYQDNVTVFASVIFQTNRDG

Intron Amino Acid Position:

518

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.7

0.35

1.1

54.9

42.7

Major BPS

54.8

0.12

1.3

66.4

39.9

Major PPT

64.4

0.33

0.9

56.6

33.4

Minor 5ss

36.6

-1.5

3.1

39.3

Minor BPS

44.6

-0.3

1.9

57.64

45.1

Associated Gene:

Gene:

ABCA2

Ensembl Gene ID:

ENSAPLG00000002548

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025674

72667 - 112105

39439

ENSAPLT00000017929

72667 - 112105

39439

ENSAPLT00000002789

72667 - 112105

39439

ENSAPLT00000036122

70053 - 112105

42053