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Intron Name: Anas_platyrhynchos_platyrhynchos_18_9204773_9205963_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9204773 - 9205963

Intron Length:

1191

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAAGG

5'SS Class:

strong_major

3'SS Sequence:

TTCTGTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTCAT

U12 Branch Point Sequence:

AGTTCAATAACT

Flanking Amino Acid:

ALLPWPFRHKVTFMLLDQNN

Intron Amino Acid Position:

466

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.9

0.94

0.8

75.5

40.6

Major BPS

78.3

0.7

0.8

77.7

26.1

Major PPT

89.5

0.89

0.7

87.9

29.5

Minor 5ss

32.9

-2

2.9

40.4

45.3

Minor BPS

61.6

0.44

1.9

82.17

38.1

Associated Gene:

Gene:

TRAF1

Ensembl Gene ID:

ENSAPLG00000022423

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048461

9202577 - 9233172

30596

ENSAPLT00000018865

9202577 - 9232044

29468