Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9206113_9206716_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9206113 - 9206716

Intron Length:

604

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAACAC

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTAAT

U12 Branch Point Sequence:

GTTTTACTAATA

Flanking Amino Acid:

TGRTVSLYSPAFYTAKYGYK

Intron Amino Acid Position:

416

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

68.4

36.7

Major BPS

86.7

0.91

0.7

84.2

21.8

Major PPT

95.9

1.03

0.5

95.6

15.1

Minor 5ss

31.6

-2.1

3.2

41.7

Minor BPS

52.8

0.08

1.9

69.85

36.1

Associated Gene:

Gene:

TRAF1

Ensembl Gene ID:

ENSAPLG00000022423

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048461

9202577 - 9233172

30596

ENSAPLT00000018865

9202577 - 9232044

29468