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Intron Name: Anas_platyrhynchos_platyrhynchos_18_9206895_9207282_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9206895 - 9207282

Intron Length:

388

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATATT

5'SS Class:

strong_major

3'SS Sequence:

TTGTTTTTTCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGAGAA

U12 Branch Point Sequence:

TGATTGAGAACT

Flanking Amino Acid:

QNIIRGLELKIAELHRCLTQ

Intron Amino Acid Position:

357

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.96

0.8

93.3

21.1

Major BPS

54.8

0.12

1.2

52.7

43.2

Major PPT

0.83

0.7

81.2

36.5

Minor 5ss

-1

59.7

44.8

Minor BPS

44.5

-0.3

2.3

67.42

42.7

Associated Gene:

Gene:

TRAF1

Ensembl Gene ID:

ENSAPLG00000022423

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018865

9202577 - 9232044

29468

ENSAPLT00000048461

9202577 - 9233172

30596