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Intron Name: Anas_platyrhynchos_platyrhynchos_18_9208326_9209087_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9208326 - 9209087

Intron Length:

762

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTCAACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

TTTTTTTCAACA

Flanking Amino Acid:

VQTETSSKEKNHSTVLINKD

Intron Amino Acid Position:

189

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.89

0.9

83.2

30.8

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

87.7

0.85

0.8

85.4

27.8

Minor 5ss

33.6

-1.9

41.3

45.3

Minor BPS

72.9

0.71

1.4

31.4

Associated Gene:

Gene:

TRAF1

Ensembl Gene ID:

ENSAPLG00000022423

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048461

9202577 - 9233172

30596

ENSAPLT00000018865

9202577 - 9232044

29468