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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9212484_9213905_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9212484 - 9213905
Intron Length:
1422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTACGTTTA
5'SS Class:
major
3'SS Sequence:
TTTTAACTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CAACTTTTAACT
Flanking Amino Acid:
SWSGIMKNFEEHQSLCEYAL
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
78
32.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
83.8
0.76
0.8
74.7
39.9
Minor 5ss
44.4
-0.6
3
57.6
41.4
Minor BPS
63.5
0.5
1.3
70.92
39.9

Associated Gene:

Gene:
TRAF1
Ensembl Gene ID:
ENSAPLG00000022423
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048461
9202577 - 9233172
30596