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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9212484_9217461_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9212484 - 9217461
Intron Length:
4978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTAACTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CAACTTTTAACT
Flanking Amino Acid:
SEGSLLAEEREHQSLCEYAL
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
83.8
0.76
0.8
74.7
39.9
Minor 5ss
35.5
-1.6
3
42.1
44.5
Minor BPS
63.5
0.5
1.3
70.92
39.9

Associated Gene:

Gene:
TRAF1
Ensembl Gene ID:
ENSAPLG00000022423
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018865
9202577 - 9232044
29468