About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9214005_9217461_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9214005 - 9217461
Intron Length:
3457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTACTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTTCCTTACTG
Flanking Amino Acid:
SEGSLLAEERAFGDAAINKE
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
82.8
0.74
0.9
73.6
41.5
Minor 5ss
35.5
-1.6
3
42.1
44.5
Minor BPS
74.3
0.62
1.6
79.08
38

Associated Gene:

Gene:
TRAF1
Ensembl Gene ID:
ENSAPLG00000022423
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048461
9202577 - 9233172
30596