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Intron Name: Anas_platyrhynchos_platyrhynchos_18_9217547_9218517_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9217547 - 9218517

Intron Length:

971

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAGGTCCT

5'SS Class:

major

3'SS Sequence:

TTCTTTTTGCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTGAT

U12 Branch Point Sequence:

CTACAGTTAACT

Flanking Amino Acid:

YCSACLSWIVRNNKNPICQK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.62

1.1

66.6

44.7

Major BPS

79.8

0.74

0.9

69.4

37.7

Major PPT

84.3

0.77

0.9

80.2

37.3

Minor 5ss

35.9

-1.6

3.3

51.6

44.8

Minor BPS

49.4

0.03

2.2

71.43

44.8

Associated Gene:

Gene:

TRAF1

Ensembl Gene ID:

ENSAPLG00000022423

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048461

9202577 - 9233172

30596

ENSAPLT00000018865

9202577 - 9232044

29468