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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_923188_951124_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
923188 - 951124
Intron Length:
27937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
CTTATTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GTTTTCTTATTC
Flanking Amino Acid:
AASGEGASQGNNFRYTCDIC
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
78.5
35.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
83
0.74
0.8
76.7
31.9
Minor 5ss
40.6
-1.1
2.8
58.6
39.3
Minor BPS
66.7
0.51
1.5
74.49
36.5

Associated Gene:

Gene:
ZNF618
Ensembl Gene ID:
ENSAPLG00000023828
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034631
912137 - 969644
57508