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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9237040_9237557_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9237040 - 9237557
Intron Length:
518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTGTC
5'SS Class:
major
3'SS Sequence:
CATTCTACTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TAATTCTTGACA
Flanking Amino Acid:
SATILDLYKRGQAFAEKNNE
Intron Amino Acid Position:
792

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
73.5
35.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
78
0.63
0.9
74.6
34.5
Minor 5ss
39.7
-1.2
3.1
52.8
44.4
Minor BPS
73.7
0.74
1.1
75.7
35

Associated Gene:

Gene:
C5
Ensembl Gene ID:
ENSAPLG00000007514
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007863
9236277 - 9249308
13032