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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9239290_9239486_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9239290 - 9239486
Intron Length:
197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTATCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCTGTATTT
Flanking Amino Acid:
TFTVYEYHAPDKRCTIFYNP
Intron Amino Acid Position:
705

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.2
0.63
0.9
70.4
40.9
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
56.4
0.28
2.2
83.14
39

Associated Gene:

Gene:
C5
Ensembl Gene ID:
ENSAPLG00000007514
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007863
9236277 - 9249308
13032