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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9239593_9239690_R

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9239593 - 9239690
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTATGTTAC
5'SS Class:
weak_major
3'SS Sequence:
GTCTTTCCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AACTCCTTAATT
Flanking Amino Acid:
DGHVVIQIDSVPADSFLCVG
Intron Amino Acid Position:
670

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.1
64.4
36.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
70.4
0.46
0.9
66.6
34.4
Minor 5ss
49.5
-0
2.4
70.5
40.1
Minor BPS
79.5
1
1.1
83.61
37.4

Associated Gene:

Gene:
C5
Ensembl Gene ID:
ENSAPLG00000007514
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007863
9236277 - 9249308
13032