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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9244385_9244643_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9244385 - 9244643
Intron Length:
259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATACT
5'SS Class:
strong_major
3'SS Sequence:
TTCATCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATGTCTATTACT
Flanking Amino Acid:
EKSMKICPTQKIHDAKNKAG
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.8
27.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
86.6
0.82
0.7
84.5
30.3
Minor 5ss
37.7
-1.4
2.9
52.3
44.3
Minor BPS
53.8
0.2
1.9
75.12
41.5

Associated Gene:

Gene:
C5
Ensembl Gene ID:
ENSAPLG00000007514
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007863
9236277 - 9249308
13032