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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9288043_9288893_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9288043 - 9288893
Intron Length:
851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCCCTC
5'SS Class:
weak_major
3'SS Sequence:
ACTGATTTATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TTGAAATCAACT
Flanking Amino Acid:
FPQSLYSSLKLKQKTMELTR
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
58
47.1
Major BPS
75
0.62
1
65.3
41.5
Major PPT
65.1
0.34
1
63.4
42
Minor 5ss
46.6
-0.3
3.2
67.7
43.5
Minor BPS
48.3
-0
2
71.84
44.1

Associated Gene:

Gene:
CNTRL
Ensembl Gene ID:
ENSAPLG00000004711
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004948
9285850 - 9313993
28144