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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9290101_9290351_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9290101 - 9290351
Intron Length:
251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACACAAA
5'SS Class:
major
3'SS Sequence:
ACGCTGTCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TTTGTTTTACCC
Flanking Amino Acid:
QLEDALAQKKISQANKEDLE
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
67.6
39.3
Major BPS
72
0.55
1
71.8
31.4
Major PPT
68.4
0.41
1
58
42.6
Minor 5ss
37
-1.5
3.2
48.2
47.5
Minor BPS
60.4
0.31
1.7
72.92
38.9

Associated Gene:

Gene:
CNTRL
Ensembl Gene ID:
ENSAPLG00000004711
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004948
9285850 - 9313993
28144
ENSAPLT00000034957
9285850 - 9314772
28923