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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_93061_93341_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93061 - 93341
Intron Length:
281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTAG
5'SS Class:
major
3'SS Sequence:
CTCCCTGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTCCAT
U12 Branch Point Sequence:
CTGTCCTCCATG
Flanking Amino Acid:
LQRRIRWLQQFTTDLHKHPE
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.6
41.6
Major BPS
52.4
0.06
1.3
64
41.7
Major PPT
77.6
0.62
0.8
71.7
32.7
Minor 5ss
34.7
-1.7
3.5
45.4
49.7
Minor BPS
47.8
-0.3
2.1
54.94
46.7

Associated Gene:

Gene:
ABCA2
Ensembl Gene ID:
ENSAPLG00000002548
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036122
70053 - 112105
42053
ENSAPLT00000025674
72667 - 112105
39439
ENSAPLT00000017929
72667 - 112105
39439
ENSAPLT00000002789
72667 - 112105
39439