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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9321167_9322667_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9321167 - 9322667
Intron Length:
1501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCATAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTCATAACA
Flanking Amino Acid:
CLLHQFTEKKFMADCPHTIG
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
85.2
25.5
Major BPS
100
1.24
0.5
100
0
Major PPT
78.6
0.64
0.9
74.4
33.8
Minor 5ss
36.3
-1.6
2.9
46.9
41.8
Minor BPS
69.9
0.62
1.6
79.79
36.3

Associated Gene:

Gene:
RAB14
Ensembl Gene ID:
ENSAPLG00000027802
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018934
9317445 - 9330771
13327