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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9355428_9356327_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9355428 - 9356327
Intron Length:
900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAAGA
5'SS Class:
major
3'SS Sequence:
TGTGTTATCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
AATGCCTTATCT
Flanking Amino Acid:
ANRKLAKLYKVSNGAGNMAV
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
71.7
40.1
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
71.4
0.48
0.9
65.9
39.7
Minor 5ss
38.4
-1.3
2.9
49.8
46
Minor BPS
65.5
0.56
1.7
79.69
42.1

Associated Gene:

Gene:
GSN
Ensembl Gene ID:
ENSAPLG00000005342
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005623
9350557 - 9364693
14137