Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9357004_9357563_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9357004 - 9357563

Intron Length:

560

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGATT

5'SS Class:

strong_major

3'SS Sequence:

TCATTTGTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCGTGAT

U12 Branch Point Sequence:

GCTGGCTCATTT

Flanking Amino Acid:

DKMSYPKHTQIQVLPESGET

Intron Amino Acid Position:

373

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.7

1.03

0.8

91.6

26.4

Major BPS

68.7

0.46

1.3

59.3

47.1

Major PPT

82.4

0.73

0.9

80.4

36.9

Minor 5ss

38.2

-1.3

3.4

56.9

47.4

Minor BPS

41.5

-0.5

2.1

56.22

46.5

Associated Gene:

Gene:

GSN

Ensembl Gene ID:

ENSAPLG00000005342

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005623

9350557 - 9364693

14137