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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9357780_9358457_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9357780 - 9358457
Intron Length:
678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCAGAAT
U12 Branch Point Sequence:
TGTTCCTTTCCC
Flanking Amino Acid:
MEDDGSGRKQIWRIEGSEKV
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.2
38.5
Major BPS
50.3
0.01
1.5
60.2
42.9
Major PPT
87.6
0.85
0.7
81.2
36.5
Minor 5ss
38.8
-1.3
3
50.2
46.4
Minor BPS
46.8
-0.2
3.6
75.71
40.7

Associated Gene:

Gene:
GSN
Ensembl Gene ID:
ENSAPLG00000005342
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005623
9350557 - 9364693
14137