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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9358592_9359382_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9358592 - 9359382
Intron Length:
791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
TACAACTCAAAT
Flanking Amino Acid:
AGKQGQIIYTWQGAHSTQDE
Intron Amino Acid Position:
489

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
68.2
42.8
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
83.4
0.75
0.8
80.3
31.8
Minor 5ss
33
-1.9
2.9
37.5
41.1
Minor BPS
47.7
-0
1.9
65.16
44.2

Associated Gene:

Gene:
GSN
Ensembl Gene ID:
ENSAPLG00000005342
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005623
9350557 - 9364693
14137