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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9359474_9360462_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9359474 - 9360462
Intron Length:
989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAAAAA
5'SS Class:
major
3'SS Sequence:
TTATTTTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
DEELGGSAVQKRVVQGKEPP
Intron Amino Acid Position:
520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
0.9
75.4
28.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.2
0.77
0.7
78.1
36.2
Minor 5ss
26.7
-2.7
2.8
30.6
42.8
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
GSN
Ensembl Gene ID:
ENSAPLG00000005342
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005623
9350557 - 9364693
14137