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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9362247_9362532_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9362247 - 9362532
Intron Length:
286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAC
U12 Branch Point Sequence:
ATCAGTTGAAGC
Flanking Amino Acid:
SVQVSEGREPENFWAALGGK
Intron Amino Acid Position:
635

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.1
37.5
Major BPS
69.5
0.49
1
71.8
33.3
Major PPT
89
0.88
0.6
87.5
22.8
Minor 5ss
23.1
-3.1
3.2
27.7
44.2
Minor BPS
41.9
-0.6
2
49.74
40.9

Associated Gene:

Gene:
GSN
Ensembl Gene ID:
ENSAPLG00000005342
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005623
9350557 - 9364693
14137